CRISPR Indel Analysis Tool

Analyze your CRISPR editing results with our advanced indel detection algorithm

1 Input Parameters

Paste your wild-type reference sequence or select a gene above
0/20 bp
Enter the 20bp targeting sequence (without PAM)
💡 How it works
Our tool searches for your sgRNA sequence on both DNA strands and automatically detects NGG PAM sites for SpCas9. The analysis will show all possible target locations with cut site predictions.

2 Sequencing Data

OR
Enter edited sequences from your CRISPR experiment

Advanced Analysis Features

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Bidirectional Search

Searches both DNA strands for sgRNA targets and PAM sites

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Full Gene Support

Access complete CDS for 22,280+ mouse genes

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Detailed Results

Visualize indels, efficiency, and alignment quality

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Fast Analysis

Get results in seconds with our optimized algorithms